Home » Health » New research presented at the European Congress of Clinical Microbiology & Infectious Diseases has identified medications that may reduce the harmful effects of antibiotics on the gut microbiome while maintaining their effectiveness. Antibiotics can lead to an imbalance in gut bacteria, which can cause gastrointestinal problems and long-term health issues. Two antibiotic classes, tetracyclines and macrolides, were found to kill more than half the gut bacterial species they tested, potentially altering the gut microbiome long-term. The researchers identified several antidote drugs, including anticoagulant dicumarol and two anti-inflammatory drugs, tolfenamic acid and diflunisal, that protected natural bacterial communities.

New research presented at the European Congress of Clinical Microbiology & Infectious Diseases has identified medications that may reduce the harmful effects of antibiotics on the gut microbiome while maintaining their effectiveness. Antibiotics can lead to an imbalance in gut bacteria, which can cause gastrointestinal problems and long-term health issues. Two antibiotic classes, tetracyclines and macrolides, were found to kill more than half the gut bacterial species they tested, potentially altering the gut microbiome long-term. The researchers identified several antidote drugs, including anticoagulant dicumarol and two anti-inflammatory drugs, tolfenamic acid and diflunisal, that protected natural bacterial communities.

As our immune systems continue to battle against antibiotic-resistant bacteria, scientists are searching for new ways to make antibiotics more effective. One of the challenges of using antibiotics, however, is their negative impact on gut bacteria, which can result in serious side effects. But now, a group of researchers have made a breakthrough discovery, identifying compounds that can reduce the harmful effects of antibiotics on gut bacteria, making them more viable options in the fight against infection. In this article, we’ll explore the details of this discovery and what it could mean for the future of antibiotics.


Antibiotics are often prescribed to treat bacterial infections. However, the use of antibiotics can also destroy the beneficial microorganisms found in the gut, leading to long-term health effects. To address this issue, researchers from the European Molecular Biology Laboratory in Heidelberg, Germany, have identified several preventative medications that may lessen the collateral damage caused by antibiotics while maintaining their effectiveness against harmful bacteria. The unique study analysed the effects of 144 different antibiotics on the abundance of the most common gut bacteria, offering novel insights into reducing the adverse effects of antibiotic treatment on the gut microbiome.

Antibiotics can damage the microbial communities in the gut, resulting in an imbalance that can lead to recurrent gastrointestinal problems caused by Clostridioides difficile infections, as well as long-term health problems such as obesity, allergies, asthma, and other immunological or inflammatory diseases. The researchers analysed the growth and survival of 27 different bacterial species commonly found in the gut following treatment with 144 different antibiotics. They also assessed the minimal inhibitory concentration (MIC) for over 800 of these antibiotic-bacteria combinations. The results revealed that the majority of gut bacteria had slightly higher MICs than disease-causing bacteria, suggesting that at commonly used antibiotic concentrations, most of the tested gut bacteria would not be affected.

However, two widely used antibiotic classes, tetracyclines and macrolides, not only stopped healthy bacteria growing at much lower concentrations than those required to stop the growth of disease-causing bacteria, but they also killed more than half of the gut bacterial species they tested, potentially altering the gut microbiome composition for a long time. To protect the gut microbes, the researchers combined the antibiotics erythromycin (a macrolide) and doxycycline (a tetracycline) with a set of 1,197 pharmaceuticals to identify suitable drugs that would protect two abundant gut bacterial species from the antibiotics. The researchers identified several promising drugs, including the anticoagulant dicumarol, the gout medication benzbromarone, and two anti-inflammatory drugs, tolfenamic acid and diflunisal.

These antidote drugs also protected natural bacterial communities derived from human stool samples and in living mice without compromising the effectiveness of the antibiotics against disease-causing bacteria. Dr Ulrike Lober of the Max-Delbruck-Center for Molecular Medicine in Berlin, Germany, who is presenting the research, said, “This Herculean undertaking by an international team of scientists has identified a novel approach that combines antibiotics with a protective antidote to help keep the gut microbiome healthy and reduce the harmful side effects of antibiotics without compromising their efficiency. Despite our promising findings, further research is needed to identify optimum and personalized combinations of antidote drugs and to exclude any potential long-term effects on the gut microbiome.”


In conclusion, this groundbreaking discovery could mark a major milestone in the fight against antibiotic resistance. As the search for alternative treatments continues, researchers have now found a way to reduce the potentially harmful side effects of antibiotics on gut bacteria. This could not only help improve patient outcomes but also ensure that our current arsenal of antibiotics remains effective for generations to come. With ongoing studies and continued research, we can hope that this breakthrough could pave the way for new, safe and effective therapeutic interventions in the future.

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